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    Home » Recipes » Gluten Free Breakfast

    Gluten Free Egg Muffins (Egg Bites)

    Published: Jan 6, 2025 by Cinde LittleThis post may contain affiliate links2 Comments

    Jump to Recipe Print Recipe

    Eggs are natures’ fast food! They're naturally gluten free and can be prepared in countless ways. Make a dozen gluten free Egg Muffins, also called Egg Bites, and you've got a healthy grab-and-go option for a week.

    Egg Muffins in a muffin tin surrounded by fresh tomatoes, broccoli and spinach leaves.

    Home cooks need options for breakfast that are quick, even better, grab-and-go. My line up of ideas for busy mornings includes Overnight Oats, granola, chia pudding and these egg muffins. Don't forget, they are all great for travelling too.

    Jump to:
    • Ingredients
    • Instructions
    • Variations
    • Storage
    • Get The Tools
    • Gluten Free Egg Muffins (Egg Bites)

    Ingredients

    The beauty of these little egg muffins is that you can put different topping in each one. This is a great way to use up bites of veggies, meat or cheese in your fridge. It also adds variety to your breakfast and will please those fussy eaters.

    • eggs
    • onion - a small amount of diced onion adds a nice savoury taste
    • whole milk (or heavy cream)
    • cottage cheese - Optional but boosts the protein and makes a more dense texture.
    • Filling ideas:
      • bacon and cheddar cheese
      • sausage and Monterey Jack cheese
      • spinach and red pepper
      • broccoli, cherry tomatoes and feta cheese

    See recipe card for exact amounts.

    Instructions

    Do not use paper muffin liners, too much egg sticks to the paper and it doesn't work. Trust me!

    These egg muffins rise above the top of the muffin cup and look gorgeous in the oven but deflate immediately when they come out. If you’re serving breakfast to a crowd, and everyone is seated, set the muffin pan directly on the table for a few wows. In a silicone pan you can easily pop the egg muffins out and serve.

    Variations

    Cottage cheese: Add ½ cup of cottage cheese to the egg mixture and puree. This is an extra step and one extra thing to wash but it boosts the protein and makes a more smooth and dense egg bite.

    Protein powder: Some people are always looking to boost their protein so have and use protein powder. Add 1 or 2 scoops to this recipe to get to the number you want.

    Storage

    Egg muffins last all week in the fridge in an airtight container. They can also be frozen and savvy celiacs know they can take them in the car or on a plane, for something healthy when there will be no good options available.

    Get The Tools

    Every kitchen needs a few tools and a standard muffin pan is one of them but the cups need to be brushed or sprayed with oil. A silicone muffin pan or silicone muffin liners are a good reusable option. Every pan is slightly different so figure out the exact cooking time for you and make a note of it.

    A muffin pan with cooked Egg Muffins surrounded by tomatoes and broccoli.
    Egg Muffins in a muffin tin surrounded by fresh tomatoes, broccoli and spinach leaves.

    Gluten Free Egg Muffins (Egg Bites)

    Eggs are natures’ fast food. These are a great way to use up bits of food in your fridge and make grab-and-go breakfast or snacks, for the whole week.
    No ratings yet
    Print Pin Rate
    Course: Breakfast, brunch
    Cuisine: Canadian
    Keyword: egg bites, egg muffins, gluten free breakfast, gluten free egg bites
    Prep Time: 20 minutes minutes
    Cook Time: 20 minutes minutes
    Servings: 12 muffins
    Calories: 96kcal
    Author: Cinde Little

    Ingredients

    • 8 eggs
    • 2 tablespoon finely chopped onion
    • 2 tablespoon whole milk (or heavy cream)
    • ½ teaspoon salt
    • ¼ teaspoon pepper

    Optional for more protein and a dense texture

    • ½ cup cottage cheese

    Three Filling Combinations

    • 1) Diced, cooked bacon and shredded cheddar cheese
    • 2) Fresh spinach and diced red pepper
    • 3) Raw broccoli pieces, halved cherry tomatoes and diced feta cheese
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    Instructions

    • Preheat oven to 350°F. Generously grease muffin cups or use a silicone pan/liners. Do not use paper liners.
    • Mix eggs, onion, milk, salt and pepper in a 4-cup liquid measuring cup. Pour into muffin tin to fill each muffin ⅔ full.
    • Add a small amount of desired toppings to each muffin cup. They rise as they bake so don't overfill.
    • Bake 20 minutes in preheated oven.
    • Transfer from oven to table and serve immediately. Store extra in airtight container and refrigerate for up to 1 week. Can also be frozen.

    Notes

    Reheat in microwave on high for 15 seconds.

    Nutrition

    Serving: 2muffins | Calories: 96kcal | Carbohydrates: 11g | Protein: 8g | Fat: 3g | Saturated Fat: 1g | Polyunsaturated Fat: 1g | Monounsaturated Fat: 1g | Trans Fat: 0.01g | Cholesterol: 109mg | Sodium: 190mg | Potassium: 528mg | Fiber: 4g | Sugar: 3g | Vitamin A: 1110IU | Vitamin C: 136mg | Calcium: 92mg | Iron: 2mg
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    1. Janet

      November 03, 2025 at 5:53 pm

      I've been making a different version of egg muffins that I adapted from a NYT recipe. As well as 8 eggs, it has 1/2 cup of cottage cheese, 6 oz. of grated cheese, a couple of green onions (sliced) and a couple of cherry tomatoes (chopped) and 3-4 slices of bacon (diced and pre-cooked until just before crunchy). I completely agree that muffin papers would be a disaster - I use some of the bacon fat to grease the muffin tins. I have also added a small amount of other cooked and diced left-over veggies if there are some lurking in the fridge. I find that mine take 25 - 30 minutes to cook, but I am using a slightly cooler oven (closer to 325).

      Reply
      • Cinde Little

        November 04, 2025 at 9:17 pm

        Thanks for all that detail Janet. I've decided I prefer the texture with the pureed cottage cheese addition, cheddar is also a plus for me. I use bits of veggies I find in the fridge. It all sounds great!

        Reply

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    A plate with two cooked Egg Muffins surrounded by spinach, tomatoes and broccoli.
    A plate with two cooked Egg Muffins surrounded by spinach, tomatoes and broccoli.
    A plate with two cooked Egg Muffins surrounded by spinach, tomatoes and broccoli.

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